Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL645937.2-201ENST00000396808 931 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 AL157414.3-201ENST00000624276 1954 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 RN7SKP175-201ENST00000408472 289 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC012044.1-201ENST00000603431 297 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LRRC59-203ENST00000576448 1531 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC136759.1-202ENST00000530858 2194 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 MST1L-201ENST00000442552 2185 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC106794.1-201ENST00000506935 792 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 AL118516.1-201ENST00000564152 670 ntBASIC16.24■□□□□ 0.19
CHD9Q3L8U1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.24■□□□□ 0.19
CHD9Q3L8U1 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AC010141.1-201ENST00000411585 623 ntBASIC16.23■□□□□ 0.19
CHD9Q3L8U1 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 NAP1L6-202ENST00000641404 1222 ntBASIC16.23■□□□□ 0.19
CHD9Q3L8U1 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AC242376.2-201ENST00000619355 883 ntBASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AC138466.3-201ENST00000619983 221 ntBASIC16.23■□□□□ 0.19
CHD9Q3L8U1 AL359258.3-201ENST00000622910 2331 ntBASIC16.23■□□□□ 0.19
CHD9Q3L8U1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 RN7SL67P-201ENST00000492147 296 ntBASIC16.22■□□□□ 0.19
CHD9Q3L8U1 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC004466.1-201ENST00000599515 1080 ntBASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CHD9Q3L8U1 AC074138.1-201ENST00000611182 1303 ntBASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms