Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
RFX3P48380 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
RFX3P48380 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
RFX3P48380 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RFX3P48380 AP001282.1-201ENST00000531301 1499 ntBASIC14.89□□□□□ -0.03
RFX3P48380 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 AP005117.1-202ENST00000581724 1908 ntBASIC14.88□□□□□ -0.03
RFX3P48380 CICP13-201ENST00000422015 2789 ntBASIC14.88□□□□□ -0.03
RFX3P48380 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC14.88□□□□□ -0.03
RFX3P48380 TSEN15P1-201ENST00000423257 515 ntBASIC14.88□□□□□ -0.03
RFX3P48380 GPS2P2-201ENST00000430745 888 ntBASIC14.88□□□□□ -0.03
RFX3P48380 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 SPDYE14P-201ENST00000442619 822 ntBASIC14.88□□□□□ -0.03
RFX3P48380 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.88□□□□□ -0.03
RFX3P48380 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.88□□□□□ -0.03
RFX3P48380 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC14.88□□□□□ -0.03
RFX3P48380 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.88□□□□□ -0.03
RFX3P48380 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.88□□□□□ -0.03
RFX3P48380 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.88□□□□□ -0.03
RFX3P48380 AC026979.3-201ENST00000607315 403 ntBASIC14.88□□□□□ -0.03
RFX3P48380 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 AC139530.3-201ENST00000620344 690 ntBASIC14.88□□□□□ -0.03
RFX3P48380 AC084121.4-201ENST00000641598 221 ntBASIC14.88□□□□□ -0.03
RFX3P48380 AF228730.8-201ENST00000642140 221 ntBASIC14.88□□□□□ -0.03
RFX3P48380 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 AC018892.3-201ENST00000623986 2499 ntBASIC14.88□□□□□ -0.03
RFX3P48380 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
RFX3P48380 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
RFX3P48380 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.87□□□□□ -0.03
RFX3P48380 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RFX3P48380 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RFX3P48380 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RFX3P48380 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
RFX3P48380 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 AL139010.1-201ENST00000454878 894 ntBASIC14.87□□□□□ -0.03
RFX3P48380 MIR4453-201ENST00000584019 89 ntBASIC14.87□□□□□ -0.03
RFX3P48380 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.87□□□□□ -0.03
RFX3P48380 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
RFX3P48380 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
RFX3P48380 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms