Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.58■□□□□ 0.57
BRCA1P38398 FAM90A2P-201ENST00000511144 1395 ntBASIC18.58■□□□□ 0.57
BRCA1P38398 FAM90A25P-201ENST00000528404 1395 ntBASIC18.58■□□□□ 0.57
BRCA1P38398 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
BRCA1P38398 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCA1P38398 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCA1P38398 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.58■□□□□ 0.56
BRCA1P38398 AP000358.1-201ENST00000456260 156 ntBASIC18.58■□□□□ 0.56
BRCA1P38398 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCA1P38398 AC008805.1-201ENST00000590892 364 ntBASIC18.58■□□□□ 0.56
BRCA1P38398 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCA1P38398 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCA1P38398 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCA1P38398 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
BRCA1P38398 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCA1P38398 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
BRCA1P38398 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BRCA1P38398 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BRCA1P38398 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 AL627231.1-201ENST00000394467 1125 ntBASIC18.57■□□□□ 0.56
BRCA1P38398 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 DUX4L46-201ENST00000566845 751 ntBASIC18.57■□□□□ 0.56
BRCA1P38398 MIR4522-201ENST00000584932 87 ntBASIC18.57■□□□□ 0.56
BRCA1P38398 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.57■□□□□ 0.56
BRCA1P38398 AL161773.1-201ENST00000624845 863 ntBASIC18.57■□□□□ 0.56
BRCA1P38398 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 AC011840.2-201ENST00000563063 1520 ntBASIC18.57■□□□□ 0.56
BRCA1P38398 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.57■□□□□ 0.56
BRCA1P38398 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BRCA1P38398 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.57■□□□□ 0.56
BRCA1P38398 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.57■□□□□ 0.56
BRCA1P38398 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 AC027237.1-201ENST00000560942 655 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 AC100827.2-201ENST00000563214 1194 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 AC138696.2-201ENST00000607376 223 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 AC105137.3-201ENST00000617588 984 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 CASP16P-204ENST00000635032 809 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 AC090502.4-201ENST00000551714 1386 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
BRCA1P38398 AC120498.9-201ENST00000339021 3867 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.56■□□□□ 0.56
BRCA1P38398 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.56■□□□□ 0.56
BRCA1P38398 RN7SL81P-201ENST00000493781 261 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
BRCA1P38398 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
BRCA1P38398 KRT8P31-201ENST00000504812 1408 ntBASIC18.56■□□□□ 0.56
BRCA1P38398 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.56■□□□□ 0.56
BRCA1P38398 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BRCA1P38398 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms