Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SSX4O60224 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SSX4O60224 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
SSX4O60224 RP9P-202ENST00000450133 1212 ntBASIC20.98■□□□□ 0.95
SSX4O60224 AC025884.2-201ENST00000553429 711 ntBASIC20.98■□□□□ 0.95
SSX4O60224 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SSX4O60224 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.97■□□□□ 0.95
SSX4O60224 AC093536.1-201ENST00000569153 554 ntBASIC20.97■□□□□ 0.95
SSX4O60224 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
SSX4O60224 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.97■□□□□ 0.95
SSX4O60224 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX4O60224 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SSX4O60224 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.96■□□□□ 0.95
SSX4O60224 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SSX4O60224 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SSX4O60224 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.96■□□□□ 0.95
SSX4O60224 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SSX4O60224 BHLHE23-202ENST00000612929 1109 ntBASIC20.96■□□□□ 0.95
SSX4O60224 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
SSX4O60224 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SSX4O60224 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SSX4O60224 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.96■□□□□ 0.95
SSX4O60224 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SSX4O60224 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.95
SSX4O60224 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX4O60224 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX4O60224 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX4O60224 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX4O60224 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.94■□□□□ 0.94
SSX4O60224 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SSX4O60224 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SSX4O60224 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.94■□□□□ 0.94
SSX4O60224 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
SSX4O60224 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SSX4O60224 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SSX4O60224 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX4O60224 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.93■□□□□ 0.94
SSX4O60224 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.93■□□□□ 0.94
SSX4O60224 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX4O60224 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.93■□□□□ 0.94
SSX4O60224 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX4O60224 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SSX4O60224 DUX4L9-201ENST00000449051 1259 ntBASIC20.92■□□□□ 0.94
SSX4O60224 MIR3960-201ENST00000583311 91 ntBASIC20.92■□□□□ 0.94
SSX4O60224 C9orf163-202ENST00000624034 2573 ntBASIC20.92■□□□□ 0.94
SSX4O60224 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SSX4O60224 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.92■□□□□ 0.94
SSX4O60224 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC20.92■□□□□ 0.94
SSX4O60224 AC142472.1-201ENST00000612013 1741 ntBASIC20.92■□□□□ 0.94
SSX4O60224 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SSX4O60224 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SSX4O60224 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.92■□□□□ 0.94
SSX4O60224 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SSX4O60224 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SSX4O60224 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX4O60224 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SSX4O60224 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.91■□□□□ 0.94
SSX4O60224 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
SSX4O60224 DUSP8P5-201ENST00000422884 1815 ntBASIC20.9■□□□□ 0.94
SSX4O60224 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SSX4O60224 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
SSX4O60224 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.9■□□□□ 0.94
SSX4O60224 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.9■□□□□ 0.94
SSX4O60224 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SSX4O60224 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SSX4O60224 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.89■□□□□ 0.93
SSX4O60224 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SSX4O60224 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSX4O60224 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SSX4O60224 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX4O60224 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX4O60224 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
SSX4O60224 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX4O60224 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SSX4O60224 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SSX4O60224 RAP2CP1-202ENST00000605179 643 ntBASIC20.88■□□□□ 0.93
SSX4O60224 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX4O60224 WHAMMP3-201ENST00000611636 1609 ntBASIC20.88■□□□□ 0.93
SSX4O60224 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.88■□□□□ 0.93
SSX4O60224 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SSX4O60224 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SSX4O60224 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
SSX4O60224 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX4O60224 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SSX4O60224 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.86■□□□□ 0.93
SSX4O60224 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms