Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CHMP3Q9Y3E7 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 RERG-209ENST00000546331 1383 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AL512384.1-201ENST00000406683 331 ntBASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 RN7SL399P-201ENST00000471648 279 ntBASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 SLED1-202ENST00000512051 380 ntBASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 RRP7BP-205ENST00000566851 833 ntBASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CHMP3Q9Y3E7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC136604.1-201ENST00000418535 575 ntBASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 AC097359.3-201ENST00000603982 1210 ntBASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 WFDC1-204ENST00000613603 549 ntBASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
CHMP3Q9Y3E7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CHMP3Q9Y3E7 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms