Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 BAD-202ENST00000394531 631 ntTSL 3 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AC107890.1-201ENST00000422478 521 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 RN7SL618P-201ENST00000477850 296 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AC015910.1-201ENST00000579400 975 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 LINC01115-203ENST00000606068 577 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AC093028.1-201ENST00000622998 982 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AF228730.6-201ENST00000641497 218 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AC084121.3-201ENST00000641716 218 ntBASIC15.68■□□□□ 0.1
TREX1Q9NSU2 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TREX1Q9NSU2 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AC015922.1-201ENST00000421102 1152 ntBASIC15.67■□□□□ 0.1
TREX1Q9NSU2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AL844908.2-201ENST00000609461 460 ntBASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AC074044.1-201ENST00000609673 707 ntBASIC15.67■□□□□ 0.1
TREX1Q9NSU2 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 AC087499.5-201ENST00000452760 1342 ntBASIC15.67■□□□□ 0.1
TREX1Q9NSU2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.67■□□□□ 0.1
TREX1Q9NSU2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.66■□□□□ 0.1
TREX1Q9NSU2 AC067863.1-201ENST00000494933 530 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms