Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HIPK3Q9H422 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.12■□□□□ 0.33
HIPK3Q9H422 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AC008894.3-201ENST00000624324 3103 ntBASIC17.11■□□□□ 0.33
HIPK3Q9H422 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 MPV17-205ENST00000402310 906 ntTSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AL096828.3-201ENST00000615354 462 ntBASIC17.11■□□□□ 0.33
HIPK3Q9H422 BX539320.1-201ENST00000623759 877 ntBASIC17.11■□□□□ 0.33
HIPK3Q9H422 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HIPK3Q9H422 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HIPK3Q9H422 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 AL138799.1-201ENST00000448213 1675 ntBASIC17.1■□□□□ 0.33
HIPK3Q9H422 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CD8B2-202ENST00000417670 633 ntBASIC17.1■□□□□ 0.33
HIPK3Q9H422 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 HIST2H2BC-201ENST00000498492 580 ntBASIC17.1■□□□□ 0.33
HIPK3Q9H422 GAPDHP40-201ENST00000505218 1006 ntBASIC17.1■□□□□ 0.33
HIPK3Q9H422 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 AC016629.1-201ENST00000596579 586 ntBASIC17.1■□□□□ 0.33
HIPK3Q9H422 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HIPK3Q9H422 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HIPK3Q9H422 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms