Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 HLA-H-201ENST00000383620 1096 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC004987.2-201ENST00000395959 1148 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 MCCD1P2-201ENST00000423228 335 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 SLC25A39P2-201ENST00000537614 270 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 LINC01225-203ENST00000563550 1244 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 MIR600HG-201ENST00000449175 5984 ntBASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.2■□□□□ 0.02
CLHC1Q8NHS4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC006058.4-201ENST00000624016 1670 ntBASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 MIR346-201ENST00000362234 95 ntBASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AL022342.1-201ENST00000400363 863 ntBASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC069335.1-201ENST00000489972 472 ntBASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 PGAM5P1-201ENST00000518923 814 ntBASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.19■□□□□ 0.02
CLHC1Q8NHS4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLHC1Q8NHS4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms