Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP54Q70EL1 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC20.43■□□□□ 0.86
USP54Q70EL1 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 PRORSD1P-202ENST00000563365 2154 ntBASIC20.43■□□□□ 0.86
USP54Q70EL1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.43■□□□□ 0.86
USP54Q70EL1 RN7SKP230-201ENST00000365642 335 ntBASIC20.43■□□□□ 0.86
USP54Q70EL1 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC20.43■□□□□ 0.86
USP54Q70EL1 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC20.43■□□□□ 0.86
USP54Q70EL1 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC20.43■□□□□ 0.86
USP54Q70EL1 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC20.43■□□□□ 0.86
USP54Q70EL1 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.43■□□□□ 0.86
USP54Q70EL1 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC20.43■□□□□ 0.86
USP54Q70EL1 AF254983.2-201ENST00000612331 135 ntBASIC20.43■□□□□ 0.86
USP54Q70EL1 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.43■□□□□ 0.86
USP54Q70EL1 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
USP54Q70EL1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 AL662890.1-201ENST00000396818 632 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 AL596276.2-201ENST00000447525 331 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC20.42■□□□□ 0.86
USP54Q70EL1 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 AL160314.3-201ENST00000556041 767 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 NAT9-222ENST00000583476 583 ntTSL 3 BASIC20.42■□□□□ 0.86
USP54Q70EL1 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC20.42■□□□□ 0.86
USP54Q70EL1 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 AL157414.3-201ENST00000624276 1954 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
USP54Q70EL1 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP54Q70EL1 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 AC106794.1-201ENST00000506935 792 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
USP54Q70EL1 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC20.42■□□□□ 0.86
USP54Q70EL1 AC002472.3-201ENST00000640124 621 ntBASIC20.42■□□□□ 0.86
USP54Q70EL1 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC20.42■□□□□ 0.86
USP54Q70EL1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.41■□□□□ 0.86
USP54Q70EL1 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
USP54Q70EL1 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.41■□□□□ 0.86
USP54Q70EL1 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USP54Q70EL1 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC20.41■□□□□ 0.86
USP54Q70EL1 DPM3-202ENST00000368399 517 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
USP54Q70EL1 CYP46A4P-201ENST00000414953 267 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC20.41■□□□□ 0.86
USP54Q70EL1 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.41■□□□□ 0.86
USP54Q70EL1 ALG3P1-201ENST00000508806 1114 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC20.41■□□□□ 0.86
USP54Q70EL1 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC20.41■□□□□ 0.86
USP54Q70EL1 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC20.41■□□□□ 0.86
USP54Q70EL1 AL023803.2-201ENST00000620080 638 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.41■□□□□ 0.86
USP54Q70EL1 AC009093.2-202ENST00000620513 2079 ntBASIC20.41■□□□□ 0.86
USP54Q70EL1 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USP54Q70EL1 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP54Q70EL1 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.41■□□□□ 0.86
USP54Q70EL1 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC20.4■□□□□ 0.86
USP54Q70EL1 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.4■□□□□ 0.86
USP54Q70EL1 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
USP54Q70EL1 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC20.4■□□□□ 0.86
USP54Q70EL1 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC20.4■□□□□ 0.86
USP54Q70EL1 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC20.4■□□□□ 0.86
USP54Q70EL1 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
USP54Q70EL1 Z98259.2-201ENST00000641583 609 ntBASIC20.4■□□□□ 0.86
USP54Q70EL1 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.4■□□□□ 0.86
USP54Q70EL1 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP54Q70EL1 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
USP54Q70EL1 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.4■□□□□ 0.86
USP54Q70EL1 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms