Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IGHV3-47-201ENST00000425060 335 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 DAP-202ENST00000432074 1048 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC11.92□□□□□ -0.5
FOXA3P55318 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 KRT17P6-201ENST00000453795 1220 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 BX005266.1-201ENST00000473402 457 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
FOXA3P55318 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
FOXA3P55318 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC11.92□□□□□ -0.5
FOXA3P55318 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 ILF3-AS1-201ENST00000591501 1983 ntBASIC11.92□□□□□ -0.5
FOXA3P55318 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
FOXA3P55318 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
FOXA3P55318 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC11.92□□□□□ -0.5
FOXA3P55318 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
FOXA3P55318 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 C8orf49-201ENST00000525043 1968 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
FOXA3P55318 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 DRAXINP1-201ENST00000437611 948 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 AC104076.2-201ENST00000448912 469 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 BX276092.5-203ENST00000456199 560 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC11.91□□□□□ -0.5
FOXA3P55318 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
FOXA3P55318 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 AL121672.3-201ENST00000608644 468 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 AC148477.4-201ENST00000613430 1793 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 AP005117.1-201ENST00000584346 1413 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
FOXA3P55318 PI4KAP1-204ENST00000612579 1703 ntBASIC11.91□□□□□ -0.5
FOXA3P55318 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
FOXA3P55318 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.91□□□□□ -0.5
FOXA3P55318 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
FOXA3P55318 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms