Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRCA1P38398 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
BRCA1P38398 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCA1P38398 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCA1P38398 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.61■□□□□ 0.57
BRCA1P38398 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
BRCA1P38398 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.61■□□□□ 0.57
BRCA1P38398 AC022616.1-201ENST00000518688 554 ntBASIC18.61■□□□□ 0.57
BRCA1P38398 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.61■□□□□ 0.57
BRCA1P38398 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCA1P38398 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 AP001094.4-201ENST00000579008 2176 ntBASIC18.61■□□□□ 0.57
BRCA1P38398 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
BRCA1P38398 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 AL132780.4-201ENST00000624870 1135 ntBASIC18.61■□□□□ 0.57
BRCA1P38398 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
BRCA1P38398 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCA1P38398 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
BRCA1P38398 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 AC078875.1-201ENST00000431907 724 ntBASIC18.6■□□□□ 0.57
BRCA1P38398 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.6■□□□□ 0.57
BRCA1P38398 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
BRCA1P38398 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
BRCA1P38398 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.6■□□□□ 0.57
BRCA1P38398 MIR5196-201ENST00000578146 115 ntBASIC18.6■□□□□ 0.57
BRCA1P38398 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.6■□□□□ 0.57
BRCA1P38398 MIR6858-201ENST00000620733 67 ntBASIC18.6■□□□□ 0.57
BRCA1P38398 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
BRCA1P38398 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 FKBP4P6-201ENST00000457486 1332 ntBASIC18.6■□□□□ 0.57
BRCA1P38398 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCA1P38398 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.59■□□□□ 0.57
BRCA1P38398 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 FAM58BP-201ENST00000439056 645 ntBASIC18.59■□□□□ 0.57
BRCA1P38398 KLF2P1-201ENST00000447438 1042 ntBASIC18.59■□□□□ 0.57
BRCA1P38398 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.59■□□□□ 0.57
BRCA1P38398 AC130709.1-201ENST00000484779 1212 ntBASIC18.59■□□□□ 0.57
BRCA1P38398 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.59■□□□□ 0.57
BRCA1P38398 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC18.59■□□□□ 0.57
BRCA1P38398 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRCA1P38398 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCA1P38398 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.58■□□□□ 0.57
BRCA1P38398 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.58■□□□□ 0.57
BRCA1P38398 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.58■□□□□ 0.57
BRCA1P38398 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC18.58■□□□□ 0.57
BRCA1P38398 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.58■□□□□ 0.57
BRCA1P38398 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.58■□□□□ 0.57
BRCA1P38398 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 INE2-201ENST00000630399 1874 ntBASIC18.58■□□□□ 0.57
BRCA1P38398 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BRCA1P38398 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
BRCA1P38398 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.58■□□□□ 0.57
BRCA1P38398 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms