Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 COX5BP8-201ENST00000416911 349 ntBASIC17.95■□□□□ 0.46
SMARCA1P28370 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AC011495.1-201ENST00000498085 584 ntBASIC17.95■□□□□ 0.46
SMARCA1P28370 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AL033527.5-201ENST00000641382 801 ntBASIC17.95■□□□□ 0.46
SMARCA1P28370 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.95■□□□□ 0.46
SMARCA1P28370 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.95■□□□□ 0.46
SMARCA1P28370 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SMARCA1P28370 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.95■□□□□ 0.46
SMARCA1P28370 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
SMARCA1P28370 AC087481.3-201ENST00000602886 1894 ntBASIC17.95■□□□□ 0.46
SMARCA1P28370 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 AP003680.1-201ENST00000598970 3660 ntBASIC17.94■□□□□ 0.46
SMARCA1P28370 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.94■□□□□ 0.46
SMARCA1P28370 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 C1QBPP1-201ENST00000400117 770 ntBASIC17.94■□□□□ 0.46
SMARCA1P28370 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 SOCS2P1-201ENST00000417727 557 ntBASIC17.94■□□□□ 0.46
SMARCA1P28370 AL162726.2-201ENST00000438986 1017 ntBASIC17.94■□□□□ 0.46
SMARCA1P28370 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.94■□□□□ 0.46
SMARCA1P28370 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SMARCA1P28370 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SMARCA1P28370 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.94■□□□□ 0.46
SMARCA1P28370 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.94■□□□□ 0.46
SMARCA1P28370 AC107373.2-201ENST00000607735 490 ntBASIC17.94■□□□□ 0.46
SMARCA1P28370 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.94■□□□□ 0.46
SMARCA1P28370 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.94■□□□□ 0.46
SMARCA1P28370 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
SMARCA1P28370 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SMARCA1P28370 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms