Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AC099063.4-201ENST00000641099 1602 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 ELL2P1-201ENST00000413990 1906 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 TFAMP1-201ENST00000412727 736 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AL671277.1-201ENST00000429656 993 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AC098859.1-201ENST00000502915 1238 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 YBX1P5-201ENST00000509441 847 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 RNA5SP410-201ENST00000516285 106 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 AC105233.2-201ENST00000523697 349 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 AF228730.5-201ENST00000530288 346 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 AL691432.1-201ENST00000596308 1422 ntBASIC12.08□□□□□ -0.48
HLA-DMBP28068 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HLA-DMBP28068 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.08□□□□□ -0.48
HLA-DMBP28068 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 C18orf15-201ENST00000623680 2534 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ZBTB45P2-201ENST00000452245 1531 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC006058.4-201ENST00000624016 1670 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC112693.3-201ENST00000624819 1983 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AL355306.1-201ENST00000415580 579 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AL136982.4-201ENST00000437689 1740 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AP006288.1-201ENST00000446065 395 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 ACTG1P14-201ENST00000446382 1122 ntBASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
HLA-DMBP28068 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
HLA-DMBP28068 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms