Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AC106881.1-201ENST00000605849 3329 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CICP24-201ENST00000605464 2705 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 EMBP1-201ENST00000458200 901 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 KRT18P56-201ENST00000507275 550 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 OR7E47P-204ENST00000575924 449 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 TMBIM7P-203ENST00000641617 1718 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 AC007292.2-201ENST00000593524 1812 ntBASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PEG13-201ENST00000631594 5667 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PRSS29P-201ENST00000440800 595 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AC018712.1-201ENST00000455767 687 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 KRT18P34-201ENST00000488218 1270 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AP002469.2-201ENST00000531724 424 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 MIR3909-201ENST00000579518 119 ntBASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CHMP1AQ9HD42 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CHMP1AQ9HD42 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms