Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LRCH3Q96II8 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LRCH3Q96II8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LRCH3Q96II8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.99■□□□□ 0.31
LRCH3Q96II8 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
LRCH3Q96II8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LRCH3Q96II8 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.99■□□□□ 0.31
LRCH3Q96II8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.99■□□□□ 0.31
LRCH3Q96II8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LRCH3Q96II8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LRCH3Q96II8 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 SNX33P1-201ENST00000592116 1762 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AC092473.1-201ENST00000441098 221 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 CTBP2P4-201ENST00000513884 920 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AC132872.1-201ENST00000566986 1195 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AC132192.2-201ENST00000596206 1147 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AC006453.4-201ENST00000636949 1252 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AC006277.1-201ENST00000624348 1610 ntBASIC16.98■□□□□ 0.31
LRCH3Q96II8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.98■□□□□ 0.31
LRCH3Q96II8 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LRCH3Q96II8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 AZGP1P1-201ENST00000411909 902 ntBASIC16.97■□□□□ 0.31
LRCH3Q96II8 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 KRT18P64-201ENST00000434946 1219 ntBASIC16.97■□□□□ 0.31
LRCH3Q96II8 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 AP003392.6-201ENST00000607709 325 ntBASIC16.97■□□□□ 0.31
LRCH3Q96II8 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.97■□□□□ 0.31
LRCH3Q96II8 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 AL138709.1-201ENST00000614840 1693 ntBASIC16.97■□□□□ 0.31
LRCH3Q96II8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.97■□□□□ 0.31
LRCH3Q96II8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LRCH3Q96II8 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LRCH3Q96II8 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRCH3Q96II8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LRCH3Q96II8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LRCH3Q96II8 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms