Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC20.47■□□□□ 0.87
USP54Q70EL1 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.46■□□□□ 0.87
USP54Q70EL1 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC20.46■□□□□ 0.87
USP54Q70EL1 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
USP54Q70EL1 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC20.46■□□□□ 0.87
USP54Q70EL1 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.46■□□□□ 0.87
USP54Q70EL1 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC20.46■□□□□ 0.87
USP54Q70EL1 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
USP54Q70EL1 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC20.46■□□□□ 0.87
USP54Q70EL1 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP54Q70EL1 AC008132.1-202ENST00000342005 1389 ntBASIC20.46■□□□□ 0.87
USP54Q70EL1 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.45■□□□□ 0.87
USP54Q70EL1 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC20.45■□□□□ 0.86
USP54Q70EL1 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 ACTG1P2-201ENST00000415776 1125 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 ACTG1P11-201ENST00000425411 1125 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 UPF3AP2-201ENST00000457924 1132 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.45■□□□□ 0.86
USP54Q70EL1 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC20.45■□□□□ 0.86
USP54Q70EL1 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 BNIP3P13-201ENST00000599968 566 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
USP54Q70EL1 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.45■□□□□ 0.86
USP54Q70EL1 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 KRT8P4-201ENST00000509735 1454 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC20.45■□□□□ 0.86
USP54Q70EL1 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
USP54Q70EL1 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
USP54Q70EL1 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC20.45■□□□□ 0.86
USP54Q70EL1 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 KRTAP19-9P-201ENST00000421795 191 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 IMP3P2-201ENST00000489760 475 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC20.45■□□□□ 0.86
USP54Q70EL1 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP54Q70EL1 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 CSH2-206ENST00000560142 749 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 SYT17-208ENST00000568433 812 ntTSL 3 BASIC20.45■□□□□ 0.86
USP54Q70EL1 AC005324.6-201ENST00000587972 613 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC20.45■□□□□ 0.86
USP54Q70EL1 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC20.45■□□□□ 0.86
USP54Q70EL1 PCBP2-OT1-201ENST00000634357 590 ntBASIC20.45■□□□□ 0.86
USP54Q70EL1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 AL138725.1-201ENST00000407347 1314 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.44■□□□□ 0.86
USP54Q70EL1 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
USP54Q70EL1 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.44■□□□□ 0.86
USP54Q70EL1 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 AC092506.1-202ENST00000401022 528 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC20.44■□□□□ 0.86
USP54Q70EL1 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 AC244452.3-201ENST00000636814 210 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 AC068587.8-201ENST00000641239 219 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.44■□□□□ 0.86
USP54Q70EL1 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP54Q70EL1 AC011840.2-201ENST00000563063 1520 ntBASIC20.44■□□□□ 0.86
USP54Q70EL1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP54Q70EL1 AC105250.1-201ENST00000509378 2057 ntBASIC20.43■□□□□ 0.86
USP54Q70EL1 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms