Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 HINT2P1-201ENST00000419438 481 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AC253536.4-201ENST00000440539 267 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RPL7P3-201ENST00000441388 714 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 YBX1P6-201ENST00000442962 1002 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RPL13AP20-201ENST00000459725 609 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AC009542.2-202ENST00000619004 1067 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 BCRP2-202ENST00000447763 634 ntBASIC15.21■□□□□ 0.03
COL28A1Q2UY09 AC098859.1-201ENST00000502915 1238 ntBASIC15.21■□□□□ 0.03
COL28A1Q2UY09 BCRP6-201ENST00000510112 632 ntBASIC15.21■□□□□ 0.03
COL28A1Q2UY09 BCRP7-201ENST00000511549 544 ntBASIC15.21■□□□□ 0.03
COL28A1Q2UY09 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 MIR4722-201ENST00000578292 60 ntBASIC15.21■□□□□ 0.03
COL28A1Q2UY09 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.21■□□□□ 0.03
COL28A1Q2UY09 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
COL28A1Q2UY09 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 TSPY26P-202ENST00000565928 3884 ntBASIC15.2■□□□□ 0.02
COL28A1Q2UY09 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC023824.1-201ENST00000562945 2975 ntBASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AP001258.2-201ENST00000529891 490 ntBASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms