Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13□□□□□ -0.33
CDX1P47902 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13□□□□□ -0.33
CDX1P47902 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 AL355306.1-201ENST00000415580 579 ntBASIC12.99□□□□□ -0.33
CDX1P47902 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.99□□□□□ -0.33
CDX1P47902 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.99□□□□□ -0.33
CDX1P47902 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC12.99□□□□□ -0.33
CDX1P47902 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 AP002490.2-201ENST00000524791 560 ntBASIC12.99□□□□□ -0.33
CDX1P47902 RARRES2P8-201ENST00000566335 367 ntBASIC12.99□□□□□ -0.33
CDX1P47902 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.99□□□□□ -0.33
CDX1P47902 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.99□□□□□ -0.33
CDX1P47902 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 METTL23-205ENST00000588302 925 ntTSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 CYP2A7P1-201ENST00000595391 815 ntBASIC12.99□□□□□ -0.33
CDX1P47902 AL031055.1-201ENST00000606362 631 ntBASIC12.99□□□□□ -0.33
CDX1P47902 AC099522.2-201ENST00000607001 744 ntBASIC12.99□□□□□ -0.33
CDX1P47902 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CDX1P47902 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.99□□□□□ -0.33
CDX1P47902 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CDX1P47902 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
CDX1P47902 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
CDX1P47902 HLA-A-202ENST00000376806 1854 ntBASIC12.98□□□□□ -0.33
CDX1P47902 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.98□□□□□ -0.33
CDX1P47902 ADH5P3-201ENST00000433842 1137 ntBASIC12.98□□□□□ -0.33
CDX1P47902 SPDYE11-202ENST00000450699 704 ntBASIC12.98□□□□□ -0.33
CDX1P47902 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.98□□□□□ -0.33
CDX1P47902 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CDX1P47902 SPDYE9P-201ENST00000570642 692 ntBASIC12.98□□□□□ -0.33
CDX1P47902 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.98□□□□□ -0.33
CDX1P47902 AC013467.2-201ENST00000605472 835 ntBASIC12.98□□□□□ -0.33
CDX1P47902 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.98□□□□□ -0.33
CDX1P47902 AC021097.1-201ENST00000607902 574 ntBASIC12.98□□□□□ -0.33
CDX1P47902 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.98□□□□□ -0.33
CDX1P47902 SPDYE10P-202ENST00000612005 668 ntBASIC12.98□□□□□ -0.33
CDX1P47902 SPDYE8P-202ENST00000612377 668 ntBASIC12.98□□□□□ -0.33
CDX1P47902 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms