Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
MSH3P20585 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
MSH3P20585 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
MSH3P20585 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 AC018892.3-201ENST00000623986 2499 ntBASIC15.75■□□□□ 0.11
MSH3P20585 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 AC092850.2-201ENST00000623821 2697 ntBASIC15.75■□□□□ 0.11
MSH3P20585 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.75■□□□□ 0.11
MSH3P20585 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
MSH3P20585 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
MSH3P20585 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.75■□□□□ 0.11
MSH3P20585 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.75■□□□□ 0.11
MSH3P20585 HIST3H2BA-201ENST00000436555 524 ntBASIC15.75■□□□□ 0.11
MSH3P20585 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.75■□□□□ 0.11
MSH3P20585 RNA5SP421-201ENST00000516864 134 ntBASIC15.75■□□□□ 0.11
MSH3P20585 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
MSH3P20585 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.75■□□□□ 0.11
MSH3P20585 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 PRAL-201ENST00000624952 3286 ntBASIC15.75■□□□□ 0.11
MSH3P20585 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
MSH3P20585 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
MSH3P20585 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.75■□□□□ 0.11
MSH3P20585 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.74■□□□□ 0.11
MSH3P20585 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 AL512361.1-201ENST00000554200 418 ntBASIC15.74■□□□□ 0.11
MSH3P20585 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.74■□□□□ 0.11
MSH3P20585 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.74■□□□□ 0.11
MSH3P20585 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
MSH3P20585 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms