Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 AC106820.3-201ENST00000561653 397 ntBASIC18.11■□□□□ 0.49
COL2A1P02458 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.11■□□□□ 0.49
COL2A1P02458 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.11■□□□□ 0.49
COL2A1P02458 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.11■□□□□ 0.49
COL2A1P02458 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL2A1P02458 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
COL2A1P02458 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
COL2A1P02458 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL2A1P02458 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 TPM3P8-201ENST00000330554 643 ntBASIC18.1■□□□□ 0.49
COL2A1P02458 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC18.1■□□□□ 0.49
COL2A1P02458 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL2A1P02458 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.1■□□□□ 0.49
COL2A1P02458 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.1■□□□□ 0.49
COL2A1P02458 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 AC022616.1-201ENST00000518688 554 ntBASIC18.1■□□□□ 0.49
COL2A1P02458 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC18.1■□□□□ 0.49
COL2A1P02458 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 MIR3615-201ENST00000581999 87 ntBASIC18.1■□□□□ 0.49
COL2A1P02458 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL2A1P02458 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC18.1■□□□□ 0.49
COL2A1P02458 AC073413.1-201ENST00000603927 732 ntBASIC18.1■□□□□ 0.49
COL2A1P02458 AL096828.3-201ENST00000615354 462 ntBASIC18.1■□□□□ 0.49
COL2A1P02458 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.1■□□□□ 0.49
COL2A1P02458 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL2A1P02458 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.1■□□□□ 0.49
COL2A1P02458 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 AL023775.1-201ENST00000454907 1746 ntBASIC18.09■□□□□ 0.49
COL2A1P02458 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.09■□□□□ 0.49
COL2A1P02458 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
COL2A1P02458 GHSR-202ENST00000427970 912 ntBASIC18.09■□□□□ 0.49
COL2A1P02458 AC004898.1-201ENST00000451057 766 ntBASIC18.09■□□□□ 0.49
COL2A1P02458 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.09■□□□□ 0.49
COL2A1P02458 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL2A1P02458 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 RN7SL713P-201ENST00000582127 302 ntBASIC18.09■□□□□ 0.49
COL2A1P02458 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
COL2A1P02458 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.09■□□□□ 0.49
COL2A1P02458 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
COL2A1P02458 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL2A1P02458 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL2A1P02458 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
COL2A1P02458 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC18.08■□□□□ 0.49
COL2A1P02458 FAM8A4P-201ENST00000435433 1213 ntBASIC18.08■□□□□ 0.49
COL2A1P02458 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC18.08■□□□□ 0.49
COL2A1P02458 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.08■□□□□ 0.49
COL2A1P02458 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.08■□□□□ 0.49
COL2A1P02458 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL2A1P02458 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 AL118558.3-201ENST00000607414 1079 ntBASIC18.08■□□□□ 0.49
COL2A1P02458 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL2A1P02458 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.08■□□□□ 0.49
COL2A1P02458 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL2A1P02458 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL2A1P02458 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms