Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 TFAMP1-201ENST00000412727 736 ntBASIC22.17■■□□□ 1.14
MSH5O43196 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 LINC00982-205ENST00000420957 435 ntBASIC22.17■■□□□ 1.14
MSH5O43196 AL358176.4-201ENST00000428891 675 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 AC005550.1-201ENST00000438923 312 ntTSL 2 BASIC22.17■■□□□ 1.14
MSH5O43196 AC092953.1-201ENST00000460975 543 ntBASIC22.17■■□□□ 1.14
MSH5O43196 CCDC74BP1-201ENST00000508880 1123 ntBASIC22.17■■□□□ 1.14
MSH5O43196 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC22.17■■□□□ 1.14
MSH5O43196 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 AC073911.1-201ENST00000592296 504 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH5O43196 AL353135.1-201ENST00000606729 504 ntBASIC22.17■■□□□ 1.14
MSH5O43196 AC051619.9-201ENST00000623237 597 ntBASIC22.17■■□□□ 1.14
MSH5O43196 AL512506.2-201ENST00000624472 458 ntBASIC22.17■■□□□ 1.14
MSH5O43196 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 AC092068.3-201ENST00000587894 2016 ntBASIC22.17■■□□□ 1.14
MSH5O43196 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH5O43196 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
MSH5O43196 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH5O43196 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 NEK4P1-201ENST00000433383 879 ntBASIC22.16■■□□□ 1.14
MSH5O43196 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
MSH5O43196 YTHDF3-AS1-201ENST00000603538 718 ntBASIC22.16■■□□□ 1.14
MSH5O43196 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 AC026120.1-201ENST00000611536 926 ntBASIC22.16■■□□□ 1.14
MSH5O43196 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 C2-AS1-201ENST00000630806 762 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH5O43196 ASAH1-229ENST00000636537 1056 ntTSL 2 BASIC22.16■■□□□ 1.14
MSH5O43196 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC22.16■■□□□ 1.14
MSH5O43196 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
MSH5O43196 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
MSH5O43196 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC22.15■■□□□ 1.14
MSH5O43196 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
MSH5O43196 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH5O43196 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC22.15■■□□□ 1.14
MSH5O43196 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 GAPDHP21-201ENST00000450301 1010 ntBASIC22.15■■□□□ 1.14
MSH5O43196 NOC2LP1-201ENST00000450578 752 ntBASIC22.15■■□□□ 1.14
MSH5O43196 TAAR4P-201ENST00000454843 1039 ntBASIC22.15■■□□□ 1.14
MSH5O43196 UGT1A2P-201ENST00000454886 866 ntBASIC22.15■■□□□ 1.14
MSH5O43196 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH5O43196 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC22.15■■□□□ 1.14
MSH5O43196 AC015911.4-201ENST00000588022 1070 ntBASIC22.15■■□□□ 1.14
MSH5O43196 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC22.15■■□□□ 1.14
MSH5O43196 CECR7-204ENST00000609932 568 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH5O43196 Metazoa_SRP.79-201ENST00000610676 290 ntBASIC22.15■■□□□ 1.14
MSH5O43196 AC007786.3-201ENST00000615154 596 ntBASIC22.15■■□□□ 1.14
MSH5O43196 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC22.15■■□□□ 1.14
MSH5O43196 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC22.15■■□□□ 1.14
MSH5O43196 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
MSH5O43196 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
MSH5O43196 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC22.15■■□□□ 1.14
MSH5O43196 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
MSH5O43196 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
MSH5O43196 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
MSH5O43196 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
MSH5O43196 AC005915.1-201ENST00000624912 2018 ntBASIC22.14■■□□□ 1.14
MSH5O43196 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.14
MSH5O43196 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
MSH5O43196 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
MSH5O43196 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.14■■□□□ 1.14
MSH5O43196 MTND4P31-201ENST00000425607 1343 ntBASIC22.14■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms