Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
CUX2O14529 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC26.36■■□□□ 1.81
CUX2O14529 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CUX2O14529 NDUFS6P1-201ENST00000485187 316 ntBASIC26.36■■□□□ 1.81
CUX2O14529 AC106820.3-201ENST00000561653 397 ntBASIC26.36■■□□□ 1.81
CUX2O14529 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC26.36■■□□□ 1.81
CUX2O14529 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC26.36■■□□□ 1.81
CUX2O14529 AC138466.5-201ENST00000624002 808 ntBASIC26.36■■□□□ 1.81
CUX2O14529 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
CUX2O14529 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CUX2O14529 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
CUX2O14529 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX2O14529 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX2O14529 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX2O14529 AL645608.8-201ENST00000606034 2086 ntBASIC26.35■■□□□ 1.81
CUX2O14529 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
CUX2O14529 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
CUX2O14529 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX2O14529 AREG-202ENST00000502307 956 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX2O14529 AL391280.1-201ENST00000506969 1062 ntBASIC26.35■■□□□ 1.81
CUX2O14529 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC26.35■■□□□ 1.81
CUX2O14529 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX2O14529 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC26.35■■□□□ 1.81
CUX2O14529 AC006158.1-201ENST00000610661 249 ntBASIC26.35■■□□□ 1.81
CUX2O14529 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
CUX2O14529 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CUX2O14529 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC26.35■■□□□ 1.81
CUX2O14529 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 GHSR-202ENST00000427970 912 ntBASIC26.34■■□□□ 1.81
CUX2O14529 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC26.34■■□□□ 1.81
CUX2O14529 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC26.34■■□□□ 1.81
CUX2O14529 AC009779.1-201ENST00000551138 283 ntBASIC26.34■■□□□ 1.81
CUX2O14529 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 MIR4783-201ENST00000580343 82 ntBASIC26.34■■□□□ 1.81
CUX2O14529 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC26.34■■□□□ 1.81
CUX2O14529 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CUX2O14529 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
CUX2O14529 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC26.33■■□□□ 1.81
CUX2O14529 AIRN-201ENST00000601203 4374 ntBASIC26.33■■□□□ 1.81
CUX2O14529 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC26.33■■□□□ 1.81
CUX2O14529 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC26.33■■□□□ 1.81
CUX2O14529 CMC2-214ENST00000565925 640 ntTSL 5 BASIC26.33■■□□□ 1.81
CUX2O14529 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC26.33■■□□□ 1.81
CUX2O14529 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
CUX2O14529 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
CUX2O14529 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
CUX2O14529 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX2O14529 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX2O14529 AC004554.1-201ENST00000422830 1468 ntBASIC26.32■■□□□ 1.8
CUX2O14529 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC26.32■■□□□ 1.8
CUX2O14529 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC26.32■■□□□ 1.8
CUX2O14529 PHKG1P2-201ENST00000457537 863 ntBASIC26.32■■□□□ 1.8
CUX2O14529 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX2O14529 AL162426.1-201ENST00000624141 743 ntBASIC26.32■■□□□ 1.8
CUX2O14529 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX2O14529 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 UBALD1-205ENST00000590891 2641 ntBASIC26.32■■□□□ 1.8
CUX2O14529 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC26.32■■□□□ 1.8
CUX2O14529 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC26.32■■□□□ 1.8
CUX2O14529 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX2O14529 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX2O14529 FAM90A2P-201ENST00000511144 1395 ntBASIC26.31■■□□□ 1.8
CUX2O14529 FAM90A25P-201ENST00000528404 1395 ntBASIC26.31■■□□□ 1.8
CUX2O14529 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX2O14529 AC148477.4-201ENST00000613430 1793 ntBASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms