Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 MPRIPP1-201ENST00000452433 1089 ntBASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 RN7SL48P-201ENST00000579283 293 ntBASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 AC148477.4-201ENST00000613430 1793 ntBASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CNN2P10-201ENST00000443067 918 ntBASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 EIF4HP1-201ENST00000453115 687 ntBASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AC025181.2-201ENST00000606994 802 ntBASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 AC018735.1-201ENST00000437208 1502 ntBASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC87Q9NVE4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 HINT2P1-201ENST00000419438 481 ntBASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 PRSS30P-206ENST00000641773 873 ntBASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC87Q9NVE4 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms