Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM56Q9BRZ2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AP001282.1-201ENST00000531301 1499 ntBASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 SPCS2P4-201ENST00000436160 681 ntBASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AC098859.1-201ENST00000502915 1238 ntBASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AC105233.2-201ENST00000523697 349 ntBASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AF228730.5-201ENST00000530288 346 ntBASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM56Q9BRZ2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AL691432.1-201ENST00000596308 1422 ntBASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM56Q9BRZ2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM56Q9BRZ2 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms