Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC007274.2-201ENST00000421675 662 ntBASIC20.5■□□□□ 0.87
USP54Q70EL1 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC20.5■□□□□ 0.87
USP54Q70EL1 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC20.5■□□□□ 0.87
USP54Q70EL1 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.5■□□□□ 0.87
USP54Q70EL1 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 DIO1-215ENST00000610607 796 ntTSL 5 BASIC20.5■□□□□ 0.87
USP54Q70EL1 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC20.5■□□□□ 0.87
USP54Q70EL1 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USP54Q70EL1 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP54Q70EL1 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP54Q70EL1 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
USP54Q70EL1 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 ATP6V0CP2-201ENST00000469409 207 ntBASIC20.49■□□□□ 0.87
USP54Q70EL1 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.49■□□□□ 0.87
USP54Q70EL1 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 AC007663.3-201ENST00000609632 465 ntBASIC20.49■□□□□ 0.87
USP54Q70EL1 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC20.49■□□□□ 0.87
USP54Q70EL1 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
USP54Q70EL1 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.49■□□□□ 0.87
USP54Q70EL1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
USP54Q70EL1 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.49■□□□□ 0.87
USP54Q70EL1 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP54Q70EL1 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USP54Q70EL1 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC005077.2-201ENST00000449786 690 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 SPTLC1P5-201ENST00000450718 252 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC20.48■□□□□ 0.87
USP54Q70EL1 MARK2P5-201ENST00000507649 634 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC026740.1-201ENST00000607068 791 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
USP54Q70EL1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
USP54Q70EL1 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.48■□□□□ 0.87
USP54Q70EL1 TNRC18P3-201ENST00000441896 2691 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USP54Q70EL1 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 EIF4HP1-201ENST00000453115 687 ntBASIC20.48■□□□□ 0.87
USP54Q70EL1 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP54Q70EL1 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC20.48■□□□□ 0.87
USP54Q70EL1 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USP54Q70EL1 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.47■□□□□ 0.87
USP54Q70EL1 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.47■□□□□ 0.87
USP54Q70EL1 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
USP54Q70EL1 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
USP54Q70EL1 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC20.47■□□□□ 0.87
USP54Q70EL1 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 SERF2-209ENST00000409646 559 ntTSL 4 BASIC20.47■□□□□ 0.87
USP54Q70EL1 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC20.47■□□□□ 0.87
USP54Q70EL1 HNRNPA1P63-201ENST00000427917 963 ntBASIC20.47■□□□□ 0.87
USP54Q70EL1 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC20.47■□□□□ 0.87
USP54Q70EL1 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.47■□□□□ 0.87
USP54Q70EL1 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC20.47■□□□□ 0.87
USP54Q70EL1 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
USP54Q70EL1 MIR4683-201ENST00000579659 81 ntBASIC20.47■□□□□ 0.87
USP54Q70EL1 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 MST1L-201ENST00000442552 2185 ntBASIC20.47■□□□□ 0.87
USP54Q70EL1 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.47■□□□□ 0.87
USP54Q70EL1 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP54Q70EL1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms