Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.23□□□□□ -0.13
CCDC58Q4VC31 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 LINC01711-201ENST00000598340 967 ntBASIC14.23□□□□□ -0.13
CCDC58Q4VC31 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC58Q4VC31 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 OR7E47P-204ENST00000575924 449 ntBASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 MIR4321-201ENST00000592276 80 ntBASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC58Q4VC31 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 LINC01101-201ENST00000622953 1884 ntBASIC14.21□□□□□ -0.13
CCDC58Q4VC31 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.21□□□□□ -0.13
CCDC58Q4VC31 CXCL1P1-201ENST00000502804 216 ntBASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms