Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 REXO1L1P-202ENST00000608646 1974 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 GSN-206ENST00000394353 2311 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 BNIP3P1-202ENST00000550043 1585 ntBASIC11.92□□□□□ -0.5
LINC00477Q96M19 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
LINC00477Q96M19 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC11.92□□□□□ -0.5
LINC00477Q96M19 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 FAM220BP-201ENST00000377689 816 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TFAMP1-201ENST00000412727 736 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AL139010.1-201ENST00000454878 894 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 RNA5SP410-201ENST00000516285 106 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC026979.3-201ENST00000607315 403 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC092127.1-201ENST00000567093 3455 ntBASIC11.91□□□□□ -0.5
LINC00477Q96M19 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC11.91□□□□□ -0.5
LINC00477Q96M19 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LINC00477Q96M19 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LINC00477Q96M19 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
LINC00477Q96M19 AC138969.2-201ENST00000532739 9932 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms