Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RN7SL618P-201ENST00000477850 296 ntBASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 LINC02199-201ENST00000506655 2702 ntBASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
NUP54Q7Z3B4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 REXO1L1P-202ENST00000608646 1974 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 HIST3H2BA-201ENST00000436555 524 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 INGX-202ENST00000489074 768 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AC011467.4-201ENST00000594891 528 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AL450472.2-201ENST00000603663 1156 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 AL161772.1-201ENST00000610494 4412 ntBASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NUP54Q7Z3B4 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC105917.1-201ENST00000506637 2539 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 AC004890.2-204ENST00000481968 304 ntBASIC14.66□□□□□ -0.06
NUP54Q7Z3B4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms