Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.61□□□□□ -0.23
ABCA4P78363 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
ABCA4P78363 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
ABCA4P78363 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.6□□□□□ -0.23
ABCA4P78363 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 AC243562.2-201ENST00000561247 970 ntBASIC13.6□□□□□ -0.23
ABCA4P78363 MIR3615-201ENST00000581999 87 ntBASIC13.6□□□□□ -0.23
ABCA4P78363 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.6□□□□□ -0.23
ABCA4P78363 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 AL359711.2-201ENST00000563105 872 ntBASIC13.6□□□□□ -0.23
ABCA4P78363 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
ABCA4P78363 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
ABCA4P78363 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.6□□□□□ -0.23
ABCA4P78363 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.6□□□□□ -0.23
ABCA4P78363 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.59□□□□□ -0.23
ABCA4P78363 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.59□□□□□ -0.23
ABCA4P78363 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.59□□□□□ -0.23
ABCA4P78363 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 AC007551.1-201ENST00000457394 519 ntBASIC13.59□□□□□ -0.23
ABCA4P78363 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.59□□□□□ -0.23
ABCA4P78363 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
ABCA4P78363 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.59□□□□□ -0.23
ABCA4P78363 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
ABCA4P78363 AC006033.1-201ENST00000440505 426 ntBASIC13.59□□□□□ -0.23
ABCA4P78363 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 VDAC1P7-201ENST00000462417 847 ntBASIC13.59□□□□□ -0.23
ABCA4P78363 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.59□□□□□ -0.23
ABCA4P78363 AC106872.11-201ENST00000605838 421 ntBASIC13.59□□□□□ -0.23
ABCA4P78363 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.59□□□□□ -0.23
ABCA4P78363 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.59□□□□□ -0.23
ABCA4P78363 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
ABCA4P78363 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
ABCA4P78363 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC13.58□□□□□ -0.23
ABCA4P78363 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms