Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLRN1P58418 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
CLRN1P58418 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 SPDYE7P-202ENST00000420373 878 ntBASIC14.19□□□□□ -0.14
CLRN1P58418 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 SPDYE14P-201ENST00000442619 822 ntBASIC14.19□□□□□ -0.14
CLRN1P58418 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 AC079781.4-201ENST00000641908 219 ntBASIC14.19□□□□□ -0.14
CLRN1P58418 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
CLRN1P58418 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.19□□□□□ -0.14
CLRN1P58418 AC018892.3-201ENST00000623986 2499 ntBASIC14.19□□□□□ -0.14
CLRN1P58418 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
CLRN1P58418 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CLRN1P58418 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CLRN1P58418 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.18□□□□□ -0.14
CLRN1P58418 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 GPS2P2-201ENST00000430745 888 ntBASIC14.18□□□□□ -0.14
CLRN1P58418 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 MTND6P24-201ENST00000440466 518 ntBASIC14.18□□□□□ -0.14
CLRN1P58418 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.18□□□□□ -0.14
CLRN1P58418 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
CLRN1P58418 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.18□□□□□ -0.14
CLRN1P58418 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CLRN1P58418 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CLRN1P58418 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CLRN1P58418 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN1P58418 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms