Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL8A1P27658 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.8□□□□□ -0.2
COL8A1P27658 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.8□□□□□ -0.2
COL8A1P27658 RN7SL720P-201ENST00000488178 304 ntBASIC13.8□□□□□ -0.2
COL8A1P27658 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.8□□□□□ -0.2
COL8A1P27658 RN7SL275P-201ENST00000582762 335 ntBASIC13.8□□□□□ -0.2
COL8A1P27658 AC013467.2-201ENST00000605472 835 ntBASIC13.8□□□□□ -0.2
COL8A1P27658 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
COL8A1P27658 CU633904.3-201ENST00000624042 1029 ntBASIC13.8□□□□□ -0.2
COL8A1P27658 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL8A1P27658 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL8A1P27658 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.8□□□□□ -0.2
COL8A1P27658 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
COL8A1P27658 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.79□□□□□ -0.2
COL8A1P27658 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.79□□□□□ -0.2
COL8A1P27658 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.79□□□□□ -0.2
COL8A1P27658 AC008267.1-201ENST00000474858 1069 ntBASIC13.79□□□□□ -0.2
COL8A1P27658 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.79□□□□□ -0.2
COL8A1P27658 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
COL8A1P27658 AP003419.4-201ENST00000616071 517 ntBASIC13.79□□□□□ -0.2
COL8A1P27658 AC138951.2-201ENST00000623455 1161 ntBASIC13.79□□□□□ -0.2
COL8A1P27658 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.79□□□□□ -0.2
COL8A1P27658 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
COL8A1P27658 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 KRT8P37-201ENST00000451609 1420 ntBASIC13.79□□□□□ -0.2
COL8A1P27658 AC016396.2-201ENST00000562575 1417 ntBASIC13.79□□□□□ -0.2
COL8A1P27658 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL8A1P27658 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL8A1P27658 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms