Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.66■□□□□ 0.26
BDNFP23560 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 COX5BP8-201ENST00000416911 349 ntBASIC16.66■□□□□ 0.26
BDNFP23560 AL513523.2-202ENST00000427283 2040 ntBASIC16.66■□□□□ 0.26
BDNFP23560 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.66■□□□□ 0.26
BDNFP23560 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.66■□□□□ 0.26
BDNFP23560 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BDNFP23560 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 AC063926.2-201ENST00000623766 1308 ntBASIC16.66■□□□□ 0.26
BDNFP23560 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
BDNFP23560 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BDNFP23560 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
BDNFP23560 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
BDNFP23560 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
BDNFP23560 DOC2GP-204ENST00000639052 2548 ntBASIC16.65■□□□□ 0.26
BDNFP23560 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
BDNFP23560 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
BDNFP23560 AC008741.2-201ENST00000612792 3115 ntBASIC16.65■□□□□ 0.26
BDNFP23560 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 AP006294.1-201ENST00000415407 339 ntBASIC16.65■□□□□ 0.26
BDNFP23560 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 AC036164.1-201ENST00000570544 333 ntBASIC16.65■□□□□ 0.26
BDNFP23560 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.65■□□□□ 0.26
BDNFP23560 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
BDNFP23560 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.65■□□□□ 0.26
BDNFP23560 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
BDNFP23560 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 PCDHA1-201ENST00000378133 2726 ntBASIC16.65■□□□□ 0.26
BDNFP23560 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.65■□□□□ 0.26
BDNFP23560 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
BDNFP23560 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BDNFP23560 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
BDNFP23560 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
BDNFP23560 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.26
BDNFP23560 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.64■□□□□ 0.26
BDNFP23560 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 AC098614.1-201ENST00000368528 745 ntBASIC16.64■□□□□ 0.25
BDNFP23560 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.64■□□□□ 0.25
BDNFP23560 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.64■□□□□ 0.25
BDNFP23560 AC104596.2-201ENST00000512793 793 ntBASIC16.64■□□□□ 0.25
BDNFP23560 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.64■□□□□ 0.25
BDNFP23560 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.64■□□□□ 0.25
BDNFP23560 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
BDNFP23560 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
BDNFP23560 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms