Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC106820.3-201ENST00000561653 397 ntBASIC14.9□□□□□ -0.02
COL5A1P20908 AL603832.2-201ENST00000566195 2125 ntBASIC14.9□□□□□ -0.02
COL5A1P20908 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.9□□□□□ -0.02
COL5A1P20908 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC14.9□□□□□ -0.02
COL5A1P20908 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
COL5A1P20908 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC14.9□□□□□ -0.02
COL5A1P20908 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL5A1P20908 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 HINT2P1-201ENST00000419438 481 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.89□□□□□ -0.03
COL5A1P20908 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 AC114812.1-204ENST00000449669 728 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 AC126915.1-201ENST00000522847 1038 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.89□□□□□ -0.03
COL5A1P20908 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 AL451050.2-201ENST00000606967 682 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 ZACNP1-201ENST00000612259 710 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 AL645937.2-201ENST00000396808 931 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.89□□□□□ -0.03
COL5A1P20908 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 AC079328.1-201ENST00000560358 952 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC14.89□□□□□ -0.03
COL5A1P20908 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL5A1P20908 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL5A1P20908 AC026691.1-201ENST00000602502 2017 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 AC018892.3-201ENST00000623986 2499 ntBASIC14.89□□□□□ -0.03
COL5A1P20908 AC022188.1-201ENST00000620960 1664 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 LRRC59-203ENST00000576448 1531 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 AL139094.1-201ENST00000405549 1188 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 EIF3FP3-201ENST00000434851 1086 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.88□□□□□ -0.03
COL5A1P20908 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.88□□□□□ -0.03
COL5A1P20908 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.88□□□□□ -0.03
COL5A1P20908 AC044849.1-201ENST00000519737 1188 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.88□□□□□ -0.03
COL5A1P20908 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.88□□□□□ -0.03
COL5A1P20908 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 AP001505.2-201ENST00000616815 443 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 ENPP7P14-201ENST00000621765 1040 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 SNX1-214ENST00000625244 324 ntTSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.88□□□□□ -0.03
COL5A1P20908 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL5A1P20908 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms