Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 BCRP2-202ENST00000447763 634 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 BCRP6-201ENST00000510112 632 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 BCRP7-201ENST00000511549 544 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.54■□□□□ 0.88
COL3A1P02461 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.54■□□□□ 0.88
COL3A1P02461 AC025279.2-201ENST00000569730 653 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.54■□□□□ 0.88
COL3A1P02461 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 MIR6775-201ENST00000617557 69 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 BX539320.1-201ENST00000623759 877 ntBASIC20.54■□□□□ 0.88
COL3A1P02461 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.54■□□□□ 0.88
COL3A1P02461 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL3A1P02461 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL3A1P02461 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC20.54■□□□□ 0.88
COL3A1P02461 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL3A1P02461 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 ACKR1-201ENST00000368121 1240 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.53■□□□□ 0.88
COL3A1P02461 NME2-201ENST00000393183 568 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 AL139094.1-201ENST00000405549 1188 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.53■□□□□ 0.88
COL3A1P02461 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 AC234783.1-201ENST00000441761 496 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC20.53■□□□□ 0.88
COL3A1P02461 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC20.53■□□□□ 0.88
COL3A1P02461 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 C18orf15-201ENST00000623680 2534 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL3A1P02461 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.53■□□□□ 0.88
COL3A1P02461 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL3A1P02461 AC136621.1-201ENST00000624017 2304 ntBASIC20.53■□□□□ 0.88
COL3A1P02461 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.52■□□□□ 0.88
COL3A1P02461 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
COL3A1P02461 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 AL355864.2-201ENST00000447420 863 ntBASIC20.52■□□□□ 0.88
COL3A1P02461 AL590640.2-201ENST00000457038 527 ntBASIC20.52■□□□□ 0.88
COL3A1P02461 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.52■□□□□ 0.88
COL3A1P02461 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC20.52■□□□□ 0.88
COL3A1P02461 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL3A1P02461 AC017083.2-201ENST00000608069 979 ntBASIC20.52■□□□□ 0.88
COL3A1P02461 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.52■□□□□ 0.88
COL3A1P02461 AP005019.2-201ENST00000615104 511 ntBASIC20.52■□□□□ 0.88
COL3A1P02461 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL3A1P02461 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
COL3A1P02461 GSN-206ENST00000394353 2311 ntTSL 2 BASIC20.52■□□□□ 0.87
COL3A1P02461 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL3A1P02461 PPT1-215ENST00000641471 2368 ntBASIC20.52■□□□□ 0.87
COL3A1P02461 TMBIM7P-203ENST00000641617 1718 ntBASIC20.52■□□□□ 0.87
COL3A1P02461 AC008894.3-201ENST00000624324 3103 ntBASIC20.52■□□□□ 0.87
COL3A1P02461 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
COL3A1P02461 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.51■□□□□ 0.87
COL3A1P02461 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC20.51■□□□□ 0.87
COL3A1P02461 AP000812.2-201ENST00000538934 718 ntBASIC20.51■□□□□ 0.87
COL3A1P02461 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.51■□□□□ 0.87
COL3A1P02461 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC20.51■□□□□ 0.87
COL3A1P02461 AL022328.1-201ENST00000610050 478 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms