Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP003419.4-201ENST00000616071 517 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 AC079336.7-201ENST00000623428 1078 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK3Q9BYB0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHANK3Q9BYB0 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 RN7SL720P-201ENST00000488178 304 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC055811.4-201ENST00000624039 1754 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC012313.1-201ENST00000593393 3059 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 TPM3P8-201ENST00000330554 643 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 MIR769-201ENST00000390225 118 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC134698.3-201ENST00000523880 214 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AL160314.3-201ENST00000556041 767 ntBASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC19.99■□□□□ 0.79
SHANK3Q9BYB0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 CRCP-204ENST00000398684 492 ntTSL 2 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 MPV17-204ENST00000399052 749 ntTSL 4 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 EEF1DP6-201ENST00000449232 372 ntBASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 MARK2P5-201ENST00000507649 634 ntBASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 AC138466.3-201ENST00000619983 221 ntBASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 PCBP2-OT1-201ENST00000634357 590 ntBASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.98■□□□□ 0.79
SHANK3Q9BYB0 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 AC009090.5-201ENST00000624886 2285 ntBASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 KRT8P4-201ENST00000509735 1454 ntBASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SHANK3Q9BYB0 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms