Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 PLS3-210ENST00000626746 216 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS13AQ96RL7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
VPS13AQ96RL7 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 POU5F1P6-201ENST00000466990 990 ntBASIC15.33■□□□□ 0.04
VPS13AQ96RL7 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 AC051619.9-201ENST00000623237 597 ntBASIC15.33■□□□□ 0.04
VPS13AQ96RL7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 INE2-201ENST00000630399 1874 ntBASIC15.33■□□□□ 0.04
VPS13AQ96RL7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS13AQ96RL7 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 AC087045.2-201ENST00000606279 1003 ntBASIC15.32■□□□□ 0.04
VPS13AQ96RL7 MEG3_2.1-201ENST00000611456 105 ntBASIC15.32■□□□□ 0.04
VPS13AQ96RL7 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 AL138799.1-201ENST00000448213 1675 ntBASIC15.32■□□□□ 0.04
VPS13AQ96RL7 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 MIR4649-201ENST00000582839 64 ntBASIC15.32■□□□□ 0.04
VPS13AQ96RL7 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS13AQ96RL7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms