Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HMGCS2P54868 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 GPAA1P2-201ENST00000417923 928 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 AL118558.3-201ENST00000607414 1079 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 AC145423.3-201ENST00000615987 467 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 AC138951.2-201ENST00000623455 1161 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 AC068587.10-201ENST00000641210 219 ntBASIC18.13■□□□□ 0.49
HMGCS2P54868 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
HMGCS2P54868 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGCS2P54868 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
HMGCS2P54868 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.12■□□□□ 0.49
HMGCS2P54868 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGCS2P54868 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 AC092364.2-201ENST00000596710 2692 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 AC006001.1-201ENST00000325130 474 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HMGCS2P54868 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.12■□□□□ 0.49
HMGCS2P54868 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGCS2P54868 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC18.12■□□□□ 0.49
HMGCS2P54868 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGCS2P54868 KRT18P25-201ENST00000508931 1278 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.12■□□□□ 0.49
HMGCS2P54868 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 MIR4313-201ENST00000580760 101 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 ABBA01031663.1-201ENST00000635630 790 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.12■□□□□ 0.49
HMGCS2P54868 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HMGCS2P54868 AL138799.1-201ENST00000448213 1675 ntBASIC18.12■□□□□ 0.49
HMGCS2P54868 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HMGCS2P54868 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
HMGCS2P54868 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.12■□□□□ 0.49
HMGCS2P54868 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
HMGCS2P54868 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
HMGCS2P54868 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGCS2P54868 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 PFN2-215ENST00000497148 743 ntTSL 4 BASIC18.11■□□□□ 0.49
HMGCS2P54868 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGCS2P54868 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.11■□□□□ 0.49
HMGCS2P54868 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGCS2P54868 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGCS2P54868 AL139099.5-201ENST00000635274 300 ntBASIC18.11■□□□□ 0.49
HMGCS2P54868 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGCS2P54868 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HMGCS2P54868 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGCS2P54868 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms