Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.43■□□□□ 0.06
LDLRP01130 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.43■□□□□ 0.06
LDLRP01130 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
LDLRP01130 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
LDLRP01130 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
LDLRP01130 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
LDLRP01130 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.42■□□□□ 0.06
LDLRP01130 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 AC136621.1-201ENST00000624017 2304 ntBASIC15.42■□□□□ 0.06
LDLRP01130 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
LDLRP01130 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 AC236430.1-201ENST00000402231 743 ntBASIC15.42■□□□□ 0.06
LDLRP01130 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 AC002472.2-201ENST00000442739 958 ntBASIC15.42■□□□□ 0.06
LDLRP01130 GAPDHP21-201ENST00000450301 1010 ntBASIC15.42■□□□□ 0.06
LDLRP01130 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.42■□□□□ 0.06
LDLRP01130 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.42■□□□□ 0.06
LDLRP01130 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.42■□□□□ 0.06
LDLRP01130 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.42■□□□□ 0.06
LDLRP01130 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 AL590787.1-201ENST00000568856 1315 ntBASIC15.42■□□□□ 0.06
LDLRP01130 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.42■□□□□ 0.06
LDLRP01130 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
LDLRP01130 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 OR2I1P-210ENST00000642037 4691 ntBASIC15.41■□□□□ 0.06
LDLRP01130 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.41■□□□□ 0.06
LDLRP01130 AL009178.2-201ENST00000597278 2719 ntBASIC15.41■□□□□ 0.06
LDLRP01130 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
LDLRP01130 TMBIM7P-203ENST00000641617 1718 ntBASIC15.41■□□□□ 0.06
LDLRP01130 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.41■□□□□ 0.06
LDLRP01130 AL627223.1-201ENST00000416693 442 ntBASIC15.41■□□□□ 0.06
LDLRP01130 BASP1P1-201ENST00000430708 665 ntBASIC15.41■□□□□ 0.06
LDLRP01130 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms