Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.29■□□□□ 0.52
CTDNEP1O95476 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 AC125807.1-201ENST00000483097 614 ntBASIC18.29■□□□□ 0.52
CTDNEP1O95476 AL844908.2-201ENST00000609461 460 ntBASIC18.29■□□□□ 0.52
CTDNEP1O95476 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 MIR6069-201ENST00000620069 79 ntBASIC18.29■□□□□ 0.52
CTDNEP1O95476 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 AC079781.4-201ENST00000641908 219 ntBASIC18.29■□□□□ 0.52
CTDNEP1O95476 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC006058.4-201ENST00000624016 1670 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC097493.3-201ENST00000509725 367 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC025678.2-201ENST00000562061 970 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC140878.1-201ENST00000565277 250 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC073592.8-201ENST00000624126 511 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 AC126365.1-201ENST00000578585 1514 ntBASIC18.28■□□□□ 0.52
CTDNEP1O95476 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CTDNEP1O95476 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CTDNEP1O95476 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.27■□□□□ 0.52
CTDNEP1O95476 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CTDNEP1O95476 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CTDNEP1O95476 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 AC084364.1-201ENST00000551967 1556 ntBASIC18.27■□□□□ 0.52
CTDNEP1O95476 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC18.27■□□□□ 0.52
CTDNEP1O95476 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CTDNEP1O95476 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms