Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NPHP4O75161 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC21.77■■□□□ 1.08
NPHP4O75161 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC21.77■■□□□ 1.08
NPHP4O75161 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP4O75161 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC21.77■■□□□ 1.08
NPHP4O75161 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC21.77■■□□□ 1.08
NPHP4O75161 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP4O75161 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC21.77■■□□□ 1.08
NPHP4O75161 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
NPHP4O75161 AC007787.1-201ENST00000588095 1583 ntBASIC21.77■■□□□ 1.07
NPHP4O75161 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP4O75161 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 AL158070.2-201ENST00000623713 1621 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC21.76■■□□□ 1.07
NPHP4O75161 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 MIR4649-201ENST00000582839 64 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 AL132994.2-201ENST00000603120 687 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 AC138466.3-201ENST00000619983 221 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 AC127024.7-201ENST00000625101 200 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 AC074138.1-201ENST00000611182 1303 ntBASIC21.76■■□□□ 1.07
NPHP4O75161 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHP4O75161 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHP4O75161 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP4O75161 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP4O75161 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP4O75161 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC21.75■■□□□ 1.07
NPHP4O75161 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHP4O75161 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHP4O75161 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHP4O75161 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP4O75161 AC105020.1-201ENST00000435356 2205 ntBASIC21.74■■□□□ 1.07
NPHP4O75161 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP4O75161 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 SERF2-206ENST00000409291 807 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP4O75161 AC010234.1-201ENST00000494599 870 ntBASIC21.74■■□□□ 1.07
NPHP4O75161 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 SNORD3B-2-202ENST00000571722 791 ntBASIC21.74■■□□□ 1.07
NPHP4O75161 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 NAP1L6-202ENST00000641404 1222 ntBASIC21.74■■□□□ 1.07
NPHP4O75161 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 CLUHP2-201ENST00000426660 1303 ntBASIC21.74■■□□□ 1.07
NPHP4O75161 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
NPHP4O75161 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHP4O75161 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
NPHP4O75161 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
NPHP4O75161 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHP4O75161 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHP4O75161 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms