Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 UPF3AP3-201ENST00000420996 769 ntBASIC14.13□□□□□ -0.15
SGCEO43556 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.13□□□□□ -0.15
SGCEO43556 SLC25A39P2-201ENST00000537614 270 ntBASIC14.13□□□□□ -0.15
SGCEO43556 AC092865.5-201ENST00000545435 363 ntBASIC14.13□□□□□ -0.15
SGCEO43556 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.13□□□□□ -0.15
SGCEO43556 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.13□□□□□ -0.15
SGCEO43556 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.13□□□□□ -0.15
SGCEO43556 AC055717.3-201ENST00000622967 595 ntBASIC14.13□□□□□ -0.15
SGCEO43556 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.13□□□□□ -0.15
SGCEO43556 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.13□□□□□ -0.15
SGCEO43556 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.13□□□□□ -0.15
SGCEO43556 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SGCEO43556 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SGCEO43556 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.13□□□□□ -0.15
SGCEO43556 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SGCEO43556 AL009178.2-201ENST00000597278 2719 ntBASIC14.13□□□□□ -0.15
SGCEO43556 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.13□□□□□ -0.15
SGCEO43556 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.13□□□□□ -0.15
SGCEO43556 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.12□□□□□ -0.15
SGCEO43556 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 PRAL-201ENST00000624952 3286 ntBASIC14.12□□□□□ -0.15
SGCEO43556 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 RPSAP43-201ENST00000402237 625 ntBASIC14.12□□□□□ -0.15
SGCEO43556 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 AC112482.1-201ENST00000492080 688 ntBASIC14.12□□□□□ -0.15
SGCEO43556 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.12□□□□□ -0.15
SGCEO43556 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.12□□□□□ -0.15
SGCEO43556 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.12□□□□□ -0.15
SGCEO43556 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
SGCEO43556 AL513210.1-201ENST00000629608 234 ntBASIC14.12□□□□□ -0.15
SGCEO43556 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.12□□□□□ -0.15
SGCEO43556 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SGCEO43556 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 AP005117.1-202ENST00000581724 1908 ntBASIC14.11□□□□□ -0.15
SGCEO43556 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 AP003680.1-201ENST00000598970 3660 ntBASIC14.11□□□□□ -0.15
SGCEO43556 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.11□□□□□ -0.15
SGCEO43556 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
SGCEO43556 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SGCEO43556 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms