Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 OR2I1P-209ENST00000641730 5365 ntBASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 HAUS4P1-201ENST00000406739 1145 ntBASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 MCCD1P2-201ENST00000423228 335 ntBASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 AC099063.4-201ENST00000641099 1602 ntBASIC13.96□□□□□ -0.17
RHBDD3Q9Y3P4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
RHBDD3Q9Y3P4 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 YBX2P1-201ENST00000394192 760 ntBASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 FAM86C2P-203ENST00000528684 1004 ntBASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
RHBDD3Q9Y3P4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms