Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC9P31274 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HOXC9P31274 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC9P31274 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 BCYRN1-201ENST00000418539 200 ntBASIC20.75■□□□□ 0.91
HOXC9P31274 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC20.75■□□□□ 0.91
HOXC9P31274 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC9P31274 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 AC091271.1-201ENST00000611877 1162 ntBASIC20.75■□□□□ 0.91
HOXC9P31274 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.75■□□□□ 0.91
HOXC9P31274 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HOXC9P31274 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.75■□□□□ 0.91
HOXC9P31274 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.75■□□□□ 0.91
HOXC9P31274 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
HOXC9P31274 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 AC079328.2-201ENST00000561241 3354 ntBASIC20.74■□□□□ 0.91
HOXC9P31274 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 ACTBP8-201ENST00000403258 1108 ntBASIC20.74■□□□□ 0.91
HOXC9P31274 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 KLF2P2-201ENST00000416807 1039 ntBASIC20.74■□□□□ 0.91
HOXC9P31274 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC20.74■□□□□ 0.91
HOXC9P31274 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC20.74■□□□□ 0.91
HOXC9P31274 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC20.74■□□□□ 0.91
HOXC9P31274 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC20.74■□□□□ 0.91
HOXC9P31274 AC103810.3-201ENST00000583567 96 ntBASIC20.74■□□□□ 0.91
HOXC9P31274 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HOXC9P31274 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HOXC9P31274 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HOXC9P31274 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 AC006033.1-201ENST00000440505 426 ntBASIC20.73■□□□□ 0.91
HOXC9P31274 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HOXC9P31274 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.73■□□□□ 0.91
HOXC9P31274 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.73■□□□□ 0.91
HOXC9P31274 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.73■□□□□ 0.91
HOXC9P31274 ETV2-208ENST00000621247 941 ntTSL 5 BASIC20.73■□□□□ 0.91
HOXC9P31274 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.73■□□□□ 0.91
HOXC9P31274 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms