Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 AC018735.1-201ENST00000437208 1502 ntBASIC16.31■□□□□ 0.2
CDCA3Q99618 KRT8P19-201ENST00000551916 1455 ntBASIC16.31■□□□□ 0.2
CDCA3Q99618 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 RNU1-114P-201ENST00000365297 166 ntBASIC16.31■□□□□ 0.2
CDCA3Q99618 AL008707.1-201ENST00000422498 534 ntBASIC16.31■□□□□ 0.2
CDCA3Q99618 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 EIF4HP1-201ENST00000453115 687 ntBASIC16.31■□□□□ 0.2
CDCA3Q99618 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.31■□□□□ 0.2
CDCA3Q99618 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC16.31■□□□□ 0.2
CDCA3Q99618 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDCA3Q99618 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CDCA3Q99618 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDCA3Q99618 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.3■□□□□ 0.2
CDCA3Q99618 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 AC138649.2-201ENST00000615886 705 ntBASIC16.3■□□□□ 0.2
CDCA3Q99618 PRSS30P-206ENST00000641773 873 ntBASIC16.3■□□□□ 0.2
CDCA3Q99618 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDCA3Q99618 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDCA3Q99618 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDCA3Q99618 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
CDCA3Q99618 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.29■□□□□ 0.2
CDCA3Q99618 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.29■□□□□ 0.2
CDCA3Q99618 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.29■□□□□ 0.2
CDCA3Q99618 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 AL023775.1-201ENST00000454907 1746 ntBASIC16.29■□□□□ 0.2
CDCA3Q99618 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDCA3Q99618 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms