Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 AC026691.1-201ENST00000602502 2017 ntBASIC14.73□□□□□ -0.05
RNF4P78317 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.73□□□□□ -0.05
RNF4P78317 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RNF4P78317 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.73□□□□□ -0.05
RNF4P78317 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
RNF4P78317 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
RNF4P78317 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.72□□□□□ -0.05
RNF4P78317 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.72□□□□□ -0.05
RNF4P78317 TARDBPP1-201ENST00000442013 1203 ntBASIC14.72□□□□□ -0.05
RNF4P78317 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.72□□□□□ -0.05
RNF4P78317 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.72□□□□□ -0.05
RNF4P78317 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.72□□□□□ -0.05
RNF4P78317 TERF1P3-201ENST00000505638 1227 ntBASIC14.72□□□□□ -0.05
RNF4P78317 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.72□□□□□ -0.05
RNF4P78317 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.72□□□□□ -0.05
RNF4P78317 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.72□□□□□ -0.05
RNF4P78317 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.72□□□□□ -0.05
RNF4P78317 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.72□□□□□ -0.05
RNF4P78317 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
RNF4P78317 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 AC010491.1-201ENST00000563101 2797 ntBASIC14.72□□□□□ -0.05
RNF4P78317 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RNF4P78317 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RNF4P78317 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.72□□□□□ -0.05
RNF4P78317 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 AC136604.1-201ENST00000418535 575 ntBASIC14.71□□□□□ -0.05
RNF4P78317 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.71□□□□□ -0.05
RNF4P78317 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.71□□□□□ -0.05
RNF4P78317 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 HNRNPUP1-201ENST00000554987 333 ntBASIC14.71□□□□□ -0.05
RNF4P78317 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 AC104794.3-201ENST00000566840 1248 ntBASIC14.71□□□□□ -0.05
RNF4P78317 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RNF4P78317 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
RNF4P78317 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RNF4P78317 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RNF4P78317 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.06
RNF4P78317 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
RNF4P78317 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
RNF4P78317 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.71□□□□□ -0.06
RNF4P78317 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.71□□□□□ -0.06
RNF4P78317 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RNF4P78317 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.71□□□□□ -0.06
RNF4P78317 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms