Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA1P55317 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.41■□□□□ 0.06
FOXA1P55317 AC079140.1-201ENST00000508039 487 ntBASIC15.41■□□□□ 0.06
FOXA1P55317 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA1P55317 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.41■□□□□ 0.06
FOXA1P55317 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA1P55317 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXA1P55317 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA1P55317 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
FOXA1P55317 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
FOXA1P55317 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.4■□□□□ 0.06
FOXA1P55317 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 RN7SL589P-201ENST00000481268 310 ntBASIC15.4■□□□□ 0.06
FOXA1P55317 FAM86C2P-203ENST00000528684 1004 ntBASIC15.4■□□□□ 0.06
FOXA1P55317 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 AC026120.1-201ENST00000611536 926 ntBASIC15.4■□□□□ 0.06
FOXA1P55317 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA1P55317 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 AC106881.1-201ENST00000605849 3329 ntBASIC15.4■□□□□ 0.06
FOXA1P55317 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA1P55317 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
FOXA1P55317 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
FOXA1P55317 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 KRT8P44-201ENST00000441609 1350 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 MIR940-201ENST00000401276 94 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA1P55317 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA1P55317 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.39■□□□□ 0.05
FOXA1P55317 SPDYE11-202ENST00000450699 704 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA1P55317 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA1P55317 SPDYE9P-201ENST00000570642 692 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 AL450472.2-201ENST00000603663 1156 ntBASIC15.39■□□□□ 0.05
FOXA1P55317 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.39■□□□□ 0.05
FOXA1P55317 SPDYE10P-202ENST00000612005 668 ntBASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms