Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SPDYE12P-201ENST00000618416 771 ntBASIC14.59□□□□□ -0.07
MSX1P28360 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
MSX1P28360 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX1P28360 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.59□□□□□ -0.07
MSX1P28360 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
MSX1P28360 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
MSX1P28360 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.58□□□□□ -0.07
MSX1P28360 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MSX1P28360 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MSX1P28360 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
MSX1P28360 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
MSX1P28360 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 OR8S1-201ENST00000310194 1080 ntBASIC14.58□□□□□ -0.08
MSX1P28360 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 NME2P1-201ENST00000426182 414 ntBASIC14.58□□□□□ -0.08
MSX1P28360 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 MIR6069-201ENST00000620069 79 ntBASIC14.58□□□□□ -0.08
MSX1P28360 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.58□□□□□ -0.08
MSX1P28360 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
MSX1P28360 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
MSX1P28360 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
MSX1P28360 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
MSX1P28360 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
MSX1P28360 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 REXO1L1P-202ENST00000608646 1974 ntBASIC14.57□□□□□ -0.08
MSX1P28360 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
MSX1P28360 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.57□□□□□ -0.08
MSX1P28360 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.57□□□□□ -0.08
MSX1P28360 PHKG1P2-201ENST00000457537 863 ntBASIC14.57□□□□□ -0.08
MSX1P28360 RN7SL692P-201ENST00000464677 288 ntBASIC14.57□□□□□ -0.08
MSX1P28360 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX1P28360 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 AL450472.2-201ENST00000603663 1156 ntBASIC14.57□□□□□ -0.08
MSX1P28360 AL138828.2-201ENST00000615812 383 ntBASIC14.57□□□□□ -0.08
MSX1P28360 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.57□□□□□ -0.08
MSX1P28360 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.57□□□□□ -0.08
MSX1P28360 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
MSX1P28360 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.57□□□□□ -0.08
MSX1P28360 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms