Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC008494.3-201ENST00000606615 944 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 AC025048.6-201ENST00000634326 1161 ntBASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM35Q9UPQ4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 MEP1AP4-201ENST00000423244 1087 ntBASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 RRP7BP-205ENST00000566851 833 ntBASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM35Q9UPQ4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC20.52■□□□□ 0.87
TRIM35Q9UPQ4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM35Q9UPQ4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC123567.1-201ENST00000548294 1261 ntBASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC140912.1-201ENST00000577171 1054 ntBASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 AC007431.3-201ENST00000623221 587 ntBASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 FUK-207ENST00000571514 3054 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM35Q9UPQ4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AL133267.1-201ENST00000398220 340 ntBASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 KRT18P43-201ENST00000469825 1281 ntBASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AC093726.1-201ENST00000608064 963 ntBASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 PAX6-247ENST00000638965 979 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM35Q9UPQ4 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms