Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.63■□□□□ 0.57
NUP88Q99567 AC098850.1-201ENST00000419919 790 ntBASIC18.63■□□□□ 0.57
NUP88Q99567 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.63■□□□□ 0.57
NUP88Q99567 LINC01115-203ENST00000606068 577 ntBASIC18.63■□□□□ 0.57
NUP88Q99567 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.63■□□□□ 0.57
NUP88Q99567 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NUP88Q99567 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 PCDHA1-201ENST00000378133 2726 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 AC004987.2-201ENST00000395959 1148 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 FO393414.2-201ENST00000405153 598 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP88Q99567 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP88Q99567 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 MEIS3P1-201ENST00000495167 958 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
NUP88Q99567 CR383656.12-201ENST00000549567 513 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP88Q99567 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.62■□□□□ 0.57
NUP88Q99567 AC074044.1-201ENST00000609673 707 ntBASIC18.62■□□□□ 0.57
NUP88Q99567 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.62■□□□□ 0.57
NUP88Q99567 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
NUP88Q99567 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
NUP88Q99567 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.62■□□□□ 0.57
NUP88Q99567 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NUP88Q99567 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
NUP88Q99567 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 AC134407.2-201ENST00000625089 1978 ntBASIC18.61■□□□□ 0.57
NUP88Q99567 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 KRT8P37-201ENST00000451609 1420 ntBASIC18.61■□□□□ 0.57
NUP88Q99567 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NUP88Q99567 GK-202ENST00000378941 458 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC055876.2-201ENST00000531834 546 ntBASIC18.61■□□□□ 0.57
NUP88Q99567 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.61■□□□□ 0.57
NUP88Q99567 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.61■□□□□ 0.57
NUP88Q99567 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NUP88Q99567 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
NUP88Q99567 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.61■□□□□ 0.57
NUP88Q99567 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 AL162727.3-201ENST00000635661 2787 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms