Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 AC078925.2-201ENST00000624013 1973 ntBASIC21.26■□□□□ 0.99
NPHP3Q7Z494 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 SMS-201ENST00000379404 1174 ntTSL 3 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC21.26■□□□□ 0.99
NPHP3Q7Z494 SUPT4H1P2-201ENST00000501248 353 ntBASIC21.26■□□□□ 0.99
NPHP3Q7Z494 AC134698.3-201ENST00000523880 214 ntBASIC21.26■□□□□ 0.99
NPHP3Q7Z494 MIR3907-201ENST00000579424 151 ntBASIC21.26■□□□□ 0.99
NPHP3Q7Z494 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 AC079336.7-201ENST00000623428 1078 ntBASIC21.25■□□□□ 0.99
NPHP3Q7Z494 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP3Q7Z494 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 RN7SL11P-201ENST00000471305 293 ntBASIC21.24■□□□□ 0.99
NPHP3Q7Z494 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP3Q7Z494 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 TUBBP5-203ENST00000508529 1334 ntBASIC21.23■□□□□ 0.99
NPHP3Q7Z494 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 RN7SL574P-201ENST00000581512 297 ntBASIC21.23■□□□□ 0.99
NPHP3Q7Z494 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP3Q7Z494 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 407.8 ms